The NCI Ras Initiative's Ras Pathway 2.0 exposed as a NetworkX object.


*Tumoroscope*, a generative model of spatial transcriptomics clonality, implemented in PyMC.

Comparing ML/AI summarizations of papers

Automatically download and parse research articles then summarize them with various ML and AI models.

Experimenting with multi-level and hierarchical splines in PyMC

I experimented with different structures for multi-level and hierarchical splines in PyMC, including using a multivariate normal prior distribution over the spline parameters.

SwiftBar plugin for storing text snippets

My simple application to put oft copied text in easy reach in my Mac's menu bar.

Type hinting a list subclass in Python with function overloading

How to support type hints of the dunder methods on your subclass of the built-in Python list using *function overloading*.


Python package for interfacing with Boston 311 API.

Counting Coffee

A suite of projects for tracking my coffee consumption.

Mixing centered and non-centered parameterizations in a hierarchical model with PyMC3

How to build a hierarchical model in PyMC3 with a mixture of centered and non-centered parameterizations to avoid the dreaded funnel degeneracies.

Exploration of the latent input space of a Progressive Growing GAN

We trained a Progressive Growing GAN to produce realistic, yet novel, hand radiographs and explored its latent input space to identify an embedding of bone age.